From ‘Hello Nextflow’ to Your First Pipeline

Author
Affiliation

María Touceda-Suárez & Seth Weaver

Published

August 28, 2026

Welcome to the Nextflow Crash Course — a series of hands-on workshops introducing pipeline development and execution with Nextflow.

This course is intended for…

Day 0: Prerequisites for Nextflow Workshop (Optional, self-paced)

To get the most out of this Nextflow workshop, please familiarize yourself with the following topics and complete the associated material if necessary:

Nextflow workshop prerequisites

Day 1 and 2: Workshop

Day 1: Foundations: Thinking in Channels and Processes

Day 2: From Pipeline to Production

Additional Resources

  1. COS Compute Handbook
  2. Hazel Crash Course